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16S rRNA RefSeq: V15.23    Genomic RefSeq: V10.1
Genome Explorer: Lacticaseibacillus paracasei SCB0563 (SEQF7119.1)
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NCBI Annotation for SEQF7119.1
Genome selected: Lacticaseibacillus paracasei SCB0563
Contigs:2 Bases:2898292 bps
CDS:35 rRNA:15
tmRNA:1 tRNA:60
Annotation Table [page:6]
Number of Records Found: 2643 [6 Pages]
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# Molecule PID Genome
Viewer
NA (Length)(Seq)
AA (Length)(Seq)
Range Gene Gene Product
2501 CP094661.1 UOG16413.1 open 405 [NA] 134 [AA] 1419477-1419881 MRE03_06760 EbsA family protein
2502 CP094661.1 UOG16414.1 open 399 [NA] 132 [AA] 1419906-1420304 MRE03_06765 ribonuclease HI family protein
2503 CP094661.1 UOG16415.1 open 603 [NA] 200 [AA] 1420545-1421147 MRE03_06770 nitroreductase family protein
2504 CP094661.1 UOG16416.1 open 1470 [NA] 489 [AA] 1421457-1422926 MRE03_06775 cardiolipin synthase
2505 CP094661.1 UOG16417.1 open 327 [NA] 108 [AA] 1422995-1423321 MRE03_06780 hypothetical protein
2506 CP094661.1 UOG16418.1 open 1452 [NA] 483 [AA] 1423473-1424924 MRE03_06785 helix-turn-helix domain-containing protein
2507 CP094661.1 UOG16419.1 open 231 [NA] 76 [AA] 1425299-1425529 MRE03_06790 glutaredoxin-like protein NrdH
2508 CP094661.1 UOG16420.1 open 2172 [NA] 723 [AA] 1425599-1427770 MRE03_06795 class 1b ribonucleoside-diphosphate reductase subunit alpha
2509 CP094661.1 UOG16421.1 open 981 [NA] 326 [AA] 1427823-1428803 MRE03_06800 class 1b ribonucleoside-diphosphate reductase subunit beta
2510 CP094661.1 UOG16422.1 open 882 [NA] 293 [AA] 1428880-1429761 MRE03_06805 LysR family transcriptional regulator
2511 CP094661.1 UOG16423.1 open 1905 [NA] 634 [AA] 1429989-1431893 MRE03_06810 M13 family peptidase
2512 CP094661.1 UOG16424.1 open 867 [NA] 288 [AA] 131946-132812 MRE03_00625 LysR family transcriptional regulator
2513 CP094661.1 UOG16425.1 open 297 [NA] 98 [AA] 169660-169956 MRE03_00830 hypothetical protein
2514 CP094661.1 UOG16426.1 open 1134 [NA] 377 [AA] 201276-202409 MRE03_00975 hypothetical protein
2515 CP094661.1 UOG16427.1 open 687 [NA] 228 [AA] 366977-367663 MRE03_01780 rhomboid family intramembrane serine protease
2516 CP094661.1 UOG16428.1 open 3645 [NA] 1214 [AA] 405159-408803 MRE03_01940 bacterial Ig-like domain-containing protein
2517 CP094661.1 UOG16429.1 open 687 [NA] 228 [AA] 419625-420311 MRE03_01995 amino acid ABC transporter permease
2518 CP094661.1 UOG16430.1 open 819 [NA] 272 [AA] 430463-431281 MRE03_02050 Cof-type HAD-IIB family hydrolase
2519 CP094661.1 UOG16431.1 open 852 [NA] 283 [AA] 434502-435353 MRE03_02075 PTS system mannose/fructose/sorbose family transporter subunit IID
2520 CP094661.1 UOG16432.1 open 1686 [NA] 561 [AA] 438125-439810 MRE03_02090 alpha-glucosidase
2521 CP094661.1 UOG16433.1 open 540 [NA] 179 [AA] 498322-498861 MRE03_02370 ABC transporter permease
2522 CP094661.1 UOG16434.1 open 528 [NA] 175 [AA] 600836-601363 MRE03_02750 rhomboid family intramembrane serine protease
2523 CP094661.1 UOG16435.1 open 897 [NA] 298 [AA] 642379-643275 MRE03_02945 IS3 family transposase
2524 CP094661.1 UOG16436.1 open 357 [NA] 118 [AA] 684403-684759 MRE03_03150 DUF488 family protein
2525 CP094661.1 UOG16437.1 open 1593 [NA] 530 [AA] 692557-694149 MRE03_03190 ABC transporter ATP-binding protein/permease
2526 CP094661.1 UOG16438.1 open 876 [NA] 291 [AA] 751369-752244 MRE03_03465 mechanosensitive ion channel family protein
2527 CP094661.1 UOG16439.1 open 1056 [NA] 351 [AA] 824128-825183 MRE03_03910 competence protein
2528 CP094661.1 UOG16440.1 open 978 [NA] 325 [AA] 834437-835414 MRE03_03970 GMP reductase
2529 CP094661.1 UOG16441.1 open 1263 [NA] 420 [AA] 851569-852831 MRE03_04045 DEAD/DEAH box helicase family protein
2530 CP094661.1 UOG16442.1 open 693 [NA] 230 [AA] 917499-918191 MRE03_04320 beta-phosphoglucomutase
2531 CP094661.1 UOG16443.1 open 1062 [NA] 353 [AA] 929968-931029 MRE03_04380 ABC transporter ATP-binding protein
2532 CP094661.1 UOG16444.1 open 582 [NA] 193 [AA] 931399-931980 MRE03_04385 GNAT family N-acetyltransferase
2533 CP094661.1 UOG16445.1 open 870 [NA] 289 [AA] 941029-941898 MRE03_04440 UDP-N-acetylmuramate dehydrogenase
2534 CP094661.1 UOG16446.1 open 897 [NA] 298 [AA] 950571-951467 MRE03_04490 IS3 family transposase
2535 CP094661.1 UOG16447.1 open 237 [NA] 78 [AA] 968994-969230 MRE03_04575 hypothetical protein
2536 CP094661.1 UOG16448.1 open 321 [NA] 106 [AA] 999671-999991 MRE03_04775 acetyl-CoA carboxylase
2537 CP094661.1 UOG16449.1 open 1212 [NA] 403 [AA] 1016549-1017760 MRE03_04845 MFS transporter
2538 CP094661.1 UOG16450.1 open 897 [NA] 298 [AA] 1078299-1079195 MRE03_05120 IS3 family transposase
2539 CP094661.1 UOG16451.1 open 732 [NA] 243 [AA] 1155769-1156500 MRE03_05540 nicotinamide riboside transporter PnuC
2540 CP094661.1 UOG16452.1 open 306 [NA] 101 [AA] 1186230-1186535 MRE03_05705 helix-turn-helix transcriptional regulator
2541 CP094661.1 UOG16453.1 open 861 [NA] 286 [AA] 1206546-1207406 MRE03_05800 rod shape-determining protein MreC
2542 CP094661.1 UOG16454.1 open 333 [NA] 110 [AA] 1214407-1214739 MRE03_05845 DUF3397 domain-containing protein
2543 CP094661.1 UOG16455.1 open 1251 [NA] 416 [AA] 1289036-1290286 MRE03_06170 ATP-dependent Clp protease ATP-binding subunit ClpX
2544 CP094661.1 UOG16456.1 open 1704 [NA] 567 [AA] 1393422-1395125 MRE03_06650 NFACT family protein
2545 CP094661.1 UOG16457.1 open 2787 [NA] 928 [AA] 1445996-1448782 MRE03_06890 ribonuclease H-like domain-containing protein
2546 CP094661.1 UOG16458.1 open 2295 [NA] 764 [AA] 1508542-1510836 MRE03_07190 single-stranded-DNA-specific exonuclease RecJ
2547 CP094661.1 UOG16459.1 open 906 [NA] 301 [AA] 1521885-1522790 MRE03_07245 tRNA pseudouridine(55) synthase TruB
2548 CP094661.1 UOG16460.1 open 1701 [NA] 566 [AA] 1589356-1591056 MRE03_07555 DNA repair protein RecN
2549 CP094661.1 UOG16461.1 open 1152 [NA] 383 [AA] 1623003-1624154 MRE03_07735 endolytic transglycosylase MltG
2550 CP094661.1 UOG16462.1 open 249 [NA] 82 [AA] 1636378-1636626 MRE03_07790 DUF3781 domain-containing protein
2551 CP094661.1 UOG16463.1 open 516 [NA] 171 [AA] 1648580-1649095 MRE03_07875 translation initiation factor IF-3
2552 CP094661.1 UOG16464.1 open 390 [NA] 129 [AA] 1649982-1650371 MRE03_07885 hypothetical protein
2553 CP094661.1 UOG16465.1 open 969 [NA] 322 [AA] 1673223-1674191 MRE03_08000 HD domain-containing protein
2554 CP094661.1 UOG16466.1 open 738 [NA] 245 [AA] 1726948-1727685 MRE03_08260 GntR family transcriptional regulator
2555 CP094661.1 UOG16467.1 open 1089 [NA] 362 [AA] 1834667-1835755 MRE03_08800 ABC transporter ATP-binding protein
2556 CP094661.1 UOG16468.1 open 738 [NA] 245 [AA] 1846437-1847174 MRE03_08855 phosphotransferase
2557 CP094661.1 UOG16469.1 open 204 [NA] 67 [AA] 1847534-1847737 MRE03_08860 helix-turn-helix transcriptional regulator
2558 CP094661.1 UOG16470.1 open 660 [NA] 219 [AA] 1878554-1879213 MRE03_09000 histidine phosphatase family protein
2559 CP094661.1 UOG16471.1 open 1125 [NA] 374 [AA] 1908795-1909919 MRE03_09105 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
2560 CP094661.1 UOG16472.1 open 732 [NA] 243 [AA] 1917711-1918442 MRE03_09150 amino acid ABC transporter ATP-binding protein
2561 CP094661.1 UOG16473.1 open 831 [NA] 276 [AA] 1942328-1943158 MRE03_09250 YitT family protein
2562 CP094661.1 UOG16474.1 open 1221 [NA] 406 [AA] 2040604-2041824 MRE03_09655 beta-ketoacyl-ACP synthase II
2563 CP094661.1 UOG16475.1 open 1074 [NA] 357 [AA] 2061652-2062725 MRE03_09770 AI-2E family transporter
2564 CP094661.1 UOG16476.1 open 1260 [NA] 419 [AA] 2072271-2073530 MRE03_09820 carboxylate--amine ligase
2565 CP094661.1 UOG16477.1 open 381 [NA] 126 [AA] 2080502-2080882 MRE03_09850 hypothetical protein
2566 CP094661.1 UOG16478.1 open 381 [NA] 126 [AA] 2086391-2086771 MRE03_09880 HIT family protein
2567 CP094661.1 UOG16479.1 open 897 [NA] 298 [AA] 2097688-2098584 MRE03_09920 IS3 family transposase
2568 CP094661.1 UOG16480.1 open 789 [NA] 262 [AA] 2149939-2150727 MRE03_10140 tyrosine-protein phosphatase
2569 CP094661.1 UOG16481.1 open 561 [NA] 186 [AA] 2157059-2157619 MRE03_10190 methyltransferase domain-containing protein
2570 CP094661.1 UOG16482.1 open 1953 [NA] 650 [AA] 2182002-2183954 MRE03_10295 ABC-F family ATP-binding cassette domain-containing protein
2571 CP094661.1 UOG16483.1 open 600 [NA] 199 [AA] 2195057-2195656 MRE03_10370 recombination mediator RecR
2572 CP094661.1 UOG16484.1 open 1698 [NA] 565 [AA] 2196297-2197994 MRE03_10380 DNA polymerase III subunit gamma/tau
2573 CP094661.1 UOG16485.1 open 834 [NA] 277 [AA] 2214164-2214997 MRE03_10445 hypothetical protein
2574 CP094661.1 UOG16486.1 open 444 [NA] 147 [AA] 2237976-2238419 MRE03_10560 NusG domain II-containing protein
2575 CP094661.1 UOG16487.1 open 270 [NA] 89 [AA] 2320634-2320903 MRE03_10975 hypothetical protein
2576 CP094661.1 UOG16488.1 open 225 [NA] 74 [AA] 2321854-2322078 MRE03_10990 hypothetical protein
2577 CP094661.1 UOG16489.1 open 309 [NA] 102 [AA] 2326411-2326719 MRE03_11025 hypothetical protein
2578 CP094661.1 UOG16490.1 open 234 [NA] 77 [AA] 2327067-2327300 MRE03_11035 Blp family class II bacteriocin
2579 CP094661.1 UOG16491.1 open 960 [NA] 319 [AA] 2381184-2382143 MRE03_11275 hypothetical protein
2580 CP094661.1 UOG16492.1 open 360 [NA] 119 [AA] 2398601-2398960 MRE03_11400 50S ribosomal protein L18
2581 CP094661.1 UOG16493.1 open 1500 [NA] 499 [AA] 2439868-2441367 MRE03_11615 lysine--tRNA ligase
2582 CP094661.1 UOG16494.1 open 1371 [NA] 456 [AA] 2458671-2460041 MRE03_11685 L,D-transpeptidase/peptidoglycan binding protein
2583 CP094661.1 UOG16495.1 open 1353 [NA] 450 [AA] 2485909-2487261 MRE03_11805 HD domain-containing protein
2584 CP094661.1 UOG16496.1 open 333 [NA] 110 [AA] 2493645-2493977 MRE03_11840 ASCH domain-containing protein
2585 CP094661.1 UOG16497.1 open 879 [NA] 292 [AA] 2501538-2502416 MRE03_11880 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
2586 CP094661.1 UOG16498.1 open 330 [NA] 109 [AA] 2537251-2537580 MRE03_12050 FtsX-like permease family protein
2587 CP094661.1 UOG16499.1 open 1326 [NA] 441 [AA] 2587325-2588650 MRE03_12280 PTS transporter subunit EIIC
2588 CP094661.1 UOG16500.1 open 741 [NA] 246 [AA] 2637429-2638169 MRE03_12495 MurR/RpiR family transcriptional regulator
2589 CP094661.1 UOG16501.1 open 1083 [NA] 360 [AA] 2647659-2648741 MRE03_12555 YdcF family protein
2590 CP094661.1 UOG16502.1 open 357 [NA] 118 [AA] 2667064-2667420 MRE03_12650 transcriptional regulator
2591 CP094661.1 UOG16503.1 open 381 [NA] 126 [AA] 2670588-2670968 MRE03_12665 PTS glucitol/sorbitol transporter subunit IIA
2592 CP094661.1 UOG16504.1 open 318 [NA] 105 [AA] 2710521-2710838 MRE03_12870 hypothetical protein
2593 CP094661.1 UOG16505.1 open 1410 [NA] 469 [AA] 2797625-2799034 MRE03_13310 amino acid ABC transporter substrate-binding protein/permease
2594 CP094661.1 UOG16506.1 open 1488 [NA] 495 [AA] 2817728-2819215 MRE03_13390 sensor histidine kinase
2595 CP094661.1 UOG16507.1 open 444 [NA] 147 [AA] 2832459-2832902 MRE03_13460 PTS sugar transporter subunit IIA
2596 CP094661.1 UOG16508.1 open 711 [NA] 236 [AA] 2837229-2837939 MRE03_13475 glucosamine-6-phosphate deaminase
2597 CP094661.1 UOG16509.1 open 357 [NA] 118 [AA] 2860060-2860416 MRE03_13560 ribonuclease P protein component
2598 CP094661.1 UOG16510.1 open 681 [NA] 226 [AA] 28482-29162 MRE03_00140 hypothetical protein
2599 CP094661.1 UOG16511.1 open 876 [NA] 291 [AA] 49861-50736 MRE03_00265 CPBP family intramembrane metalloprotease
2600 CP094661.1 UOG16512.1 open 897 [NA] 298 [AA] 60393-61289 MRE03_00315 IS3 family transposase
2601 CP094661.1 UOG16513.1 open 579 [NA] 192 [AA] 84296-84874 MRE03_00425 TetR/AcrR family transcriptional regulator
2602 CP094662.1 UOG16514.1 open 216 [NA] 71 [AA] 19613-19828 MRE03_13685 hypothetical protein
2603 CP094662.1 UOG16515.1 open 1125 [NA] 374 [AA] 19832-20956 MRE03_13690 hypothetical protein
2604 CP094662.1 UOG16516.1 open 1350 [NA] 449 [AA] 21399-22748 MRE03_13700 FAD-dependent oxidoreductase
2605 CP094662.1 UOG16517.1 open 504 [NA] 167 [AA] 23412-23915 MRE03_13705 SMI1/KNR4 family protein
2606 CP094662.1 UOG16518.1 open 744 [NA] 247 [AA] 24207-24950 MRE03_13710 nicotinamide mononucleotide transporter family protein
2607 CP094662.1 UOG16519.1 open 2631 [NA] 876 [AA] 25210-27840 MRE03_13715 Cna B-type domain-containing protein
2608 CP094662.1 UOG16520.1 open 348 [NA] 115 [AA] 28534-28881 MRE03_13725 helix-turn-helix transcriptional regulator
2609 CP094662.1 UOG16521.1 open 1023 [NA] 340 [AA] 29051-30073 MRE03_13730 zinc-binding alcohol dehydrogenase family protein
2610 CP094662.1 UOG16522.1 open 573 [NA] 190 [AA] 30716-31288 MRE03_13745 hypothetical protein
2611 CP094662.1 UOG16523.1 open 585 [NA] 194 [AA] 31399-31983 MRE03_13750 recombinase family protein
2612 CP094662.1 UOG16524.1 open 453 [NA] 150 [AA] 32270-32722 MRE03_13755 hypothetical protein
2613 CP094662.1 UOG16525.1 open 627 [NA] 208 [AA] 33109-33735 MRE03_13760 hypothetical protein
2614 CP094662.1 UOG16526.1 open 309 [NA] 102 [AA] 33821-34129 MRE03_13765 type II toxin-antitoxin system YafQ family toxin
2615 CP094662.1 UOG16527.1 open 288 [NA] 95 [AA] 34131-34418 MRE03_13770 type II toxin-antitoxin system RelB/DinJ family antitoxin
2616 CP094662.1 UOG16528.1 open 786 [NA] 261 [AA] 34545-35330 MRE03_13775 ParA family protein
2617 CP094662.1 UOG16529.1 open 204 [NA] 67 [AA] 35409-35612 MRE03_13780 hypothetical protein
2618 CP094662.1 UOG16530.1 open 1122 [NA] 373 [AA] 31-1152 MRE03_13570 replication initiator protein A
2619 CP094662.1 UOG16531.1 open 282 [NA] 93 [AA] 1412-1693 MRE03_13575 type II toxin-antitoxin system RelB/DinJ family antitoxin
2620 CP094662.1 UOG16532.1 open 186 [NA] 61 [AA] 1740-1925 MRE03_13580 hypothetical protein
2621 CP094662.1 UOG16533.1 open 681 [NA] 226 [AA] 1922-2602 MRE03_13585 zeta toxin family protein
2622 CP094662.1 UOG16534.1 open 279 [NA] 92 [AA] 2592-2870 MRE03_13590 hypothetical protein
2623 CP094662.1 UOG16535.1 open 2064 [NA] 687 [AA] 3374-5437 MRE03_13600 MobA/MobL family protein
2624 CP094662.1 UOG16536.1 open 312 [NA] 103 [AA] 5521-5832 MRE03_13605 hypothetical protein
2625 CP094662.1 UOG16537.1 open 615 [NA] 204 [AA] 5869-6483 MRE03_13610 hypothetical protein
2626 CP094662.1 UOG16538.1 open 336 [NA] 111 [AA] 6485-6820 MRE03_13615 CagC family type IV secretion system protein
2627 CP094662.1 UOG16539.1 open 363 [NA] 120 [AA] 6841-7203 MRE03_13620 conjugal transfer protein
2628 CP094662.1 UOG16540.1 open 660 [NA] 219 [AA] 7172-7831 MRE03_13625 conjugal transfer protein
2629 CP094662.1 UOG16541.1 open 2019 [NA] 672 [AA] 7843-9861 MRE03_13630 DUF87 domain-containing protein
2630 CP094662.1 UOG16542.1 open 1419 [NA] 472 [AA] 9854-11272 MRE03_13635 conjugal transfer protein
2631 CP094662.1 UOG16543.1 open 1158 [NA] 385 [AA] 11273-12430 MRE03_13640 phage tail tip lysozyme
2632 CP094662.1 UOG16544.1 open 618 [NA] 205 [AA] 12444-13061 MRE03_13645 hypothetical protein
2633 CP094662.1 UOG16545.1 open 369 [NA] 122 [AA] 13048-13416 MRE03_13650 thioredoxin family protein
2634 CP094662.1 UOG16546.1 open 471 [NA] 156 [AA] 13417-13887 MRE03_13655 conjugal transfer protein
2635 CP094662.1 UOG16547.1 open 1545 [NA] 514 [AA] 14117-15661 MRE03_13660 type IV secretory system conjugative DNA transfer family protein
2636 CP094662.1 UOG16548.1 open 390 [NA] 129 [AA] 15676-16065 MRE03_13665 hypothetical protein
2637 CP094662.1 UOG16549.1 open 840 [NA] 279 [AA] 16084-16923 MRE03_13670 conjugal transfer protein
2638 CP094662.1 UOG16550.1 open 411 [NA] 136 [AA] 16938-17348 MRE03_13675 hypothetical protein
2639 CP094662.1 UOG16551.1 open 2136 [NA] 711 [AA] 17355-19490 MRE03_13680 DNA topoisomerase III
2640 CP094662.1 UOG16552.1 open 228 [NA] 75 [AA] 2893-3120 MRE03_13595 hypothetical protein
2641 CP094662.1 UOG16553.1 open 63 [NA] 20 [AA] 21110-21172 MRE03_13695 putative holin-like toxin
2642 CP094662.1 UOG16554.1 open 63 [NA] 20 [AA] 28185-28247 MRE03_13720 putative holin-like toxin
2643 CP094662.1 UOG16555.1 open 54 [NA] 17 [AA] 30489-30542 MRE03_13740 hypothetical protein