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# Forsyth Bioinformatics Core Genome Assembly Pipeline
# Copyright by Forsyth, Tsute Chen
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File Description:

1. 06-10-2015-17-29-44_Logfile.txt
Computational log generated by the pipeline

2. auto_data_31
Folder containing the original raw result produced by 
Velvet (https://www.ebi.ac.uk/~zerbino/velvet/) and 
VelvetOptimizer(http://bioinformatics.net.au/software.velvetoptimiser.shtml)

3. assembly_summary.txt
Statistics of assembly result

5. SRR413299.fastq.tar.gz
Sequence reads used in this demo.
Sample Illumina raw reads were downloaded from NCBI Short Read Archive at:
http://www.ncbi.nlm.nih.gov/sra/?term=SRS295069
Results are comparable to the NCBI assembly using a different software:
http://www.ncbi.nlm.nih.gov/biosample/SAMN00792205/


6. contigs_1k.fasta
Assembled contings >= 1kb, in fasta format

6. contigs.fasta -> auto_data_31/contigs.fa
Assembled contigs of all sizes